Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015950699.1_cds_XP_016491026.1_81389
CDS Infomation

[gene=LOC107810729] [db_xref=GeneID:107810729] [protein=TBC1 domain family member 17-like] [protein_id=XP_016491026.1] [location=join(11933..12048,21517..21586,22915..23088,23663..23714,23822..23929,27379..27463,28020..28074,28189..28560,30805..30864,32520..32618,32696..32806,33499..33570,33771..33887,34716..34865,35830..35930,36813..37143)] [gbkey=CDS]
Sequence

ATGAATAGTGGCCGCAATTGCGAACATTTGTTCGCATTTGCGAAGGCAGCAGGTCAGGCC
AAGCTTCACATTTTGCGAAGCATTGGTTGCATTCGCGAGTTTGCAATTGCGAACCTACAA
ACTTTCTACTTCAACATACNACACGATCTCTCCGACGACGCCGATTACGCTGCTTCTATT
CAGCAAGGTTCATCAAGTATGAATAGGAGTGATAGCAGTAAGCAGAGTTCATCAGGTGAA
CAAGAAGGTGCTGAAATAGTATATTTGAAAGATAACGTGGCAATTCATCCGACTCAGTAT
GCTTCAGAGAGGATCAGTGGTCGACTAAAGCTGATCAAGCAAGGAGGTTCTCTGTTTATG
ACTTGGATTCCATATAAAGGGCAAAGCTCGAGTGCAAGGTTGTCTGAAAAAGATAAGAGT
CTTTATACTATACGAGCAGTTCCATTCTCGGATGTTAGGTCGATTCGCAGACACACTCCC
ACCCTGGGATGGCAATATGTTATTGTAGTTTTATCATCAGGACTTGCATTTCCTCCACTT
TATTTCTACAATGGTGGTGTCCGGGAATTTCTTGCAACAATTAAGCAACATGCATATCTT
GTGAGGTCAGCTGAAGATGCTAATGTATTTCTCGTCAACGACTTTCAAGATCCACTCCAG
AGAACTCTCTCCTCCTTGGAGCTTCCTAGGGCTGTTTCTGTAGCTAACAGTCCATCTTCA
GCTGCTGCACCTACTGATGGGGAAACTTTTGATAGAAATTCTGCATATCTTCAAGAAAAT
GCCAGGCAATGGCAAAAACATAATGATCCTGCTCGAGATTTGTCCATTCAAGTGCTAGAG
AAATTTTCTCTTGTGACCAGATTTGCTCGTGAAACAACATCTCAACTTTTTCGTGAAGCT
CAGGGAGATGGTTTCATTCCTAATGACAGGAGGAAGCAAGACCAAAAAACAAATGATTAT
CCTCGCATTGCTGAATCTAATGACGTTCAGAAGTTGCCTGAAGATGTTCAAGTGCCTGCA
GATCCCTTGGAGTTTGACAAATTGTCACTAGTATGGGGAAAACCACGGCAGCCTCCGCTG
GGAACAGAAGAGTGGTCCACTTTCCTGGATTGTGAAGGTAGAGTCACAGACTCGGAAGCA
GTAAGAAAGAGGATATTTTACGGAGGAGTCGAACAAGGTCTACGTAAAGAGGTGTGGCGA
TTTCTATTGGGATATCATTCATATGATTCAACTTATGCGGAGAGGGAATACCTTGTGTCT
GTCAGAAAGTCGGAATACGAAACGATAAAAAACCAGTGGAAGAGCATCTCTAAGGAGCAG
GCTAGAAGATTTACAAAATTTCGAGAGAGGAAAGGCCTTATTGAAAAAGATGTGGTGAGG
ACTGATCGGTCAATTTCATTCTATGATGAGGATGACAGCCCAAACATTAAGTGTTTGCGT
GATATACTGCTGACTTACTCATTCTACAACTTTGATTTGGGTTACTGTCAGGGTATGAGT
GATCTCCTTTCACCAATATTATATGTCATGGAAGATGAATCAGAATCATTTTGGTGCTTT
GTGGCATTGATGGAACGACTGGGGCCGAACTTTAACCGTGACCAAAATGGAATGCACTCT
CAGCTTTTTGCATTATCAAAGTTGGTGGAATTGTTAGACAGCCCTCTGCATAATTACTTC
AAACAGAAGGACTGCTTGAATTATTTCTTCTGCTTCCGCTGGGTTCTTATACAATTCAAA
AGGGAGTTTGAATTTGAGAAAACAATGCGGTTGTGGGAGGTATTATGGACTCACTATAGG
AGTGAGCACCTTCATCTGTATGTTTGTGTCGCAATTCTGAAAAGATATCGCAGCAAAATA
ATAAGAGAGGAGATGGATTTCGACACGCTATTGAAATTTATCAATGAGCTGAGTGGCCAT
ATTGACCTGGATGCTATTCTCAGGGATGCAGAGGCTTTGTGTATATGTGCTGGTGAGAAT
GGTGAATCTTGCATACCTCCCGGAACTCCACCTTCATTACCACTTGACGATGCTTCAATG
TACTATCAACAGGATGATGATGATGTTCTATAA

Peptide Sequence

PEP ID

XP_016491026.1
PEP Infomation

PREDICTED: TBC1 domain family member 17-like [Nicotiana tabacum]
Sequence

MNSGRNCEHLFAFAKAAGQAKLHILRSIGCIREFAIANLQTFYFNIXHDLSDDADYAASI
QQGSSSMNRSDSSKQSSSGEQEGAEIVYLKDNVAIHPTQYASERISGRLKLIKQGGSLFM
TWIPYKGQSSSARLSEKDKSLYTIRAVPFSDVRSIRRHTPTLGWQYVIVVLSSGLAFPPL
YFYNGGVREFLATIKQHAYLVRSAEDANVFLVNDFQDPLQRTLSSLELPRAVSVANSPSS
AAAPTDGETFDRNSAYLQENARQWQKHNDPARDLSIQVLEKFSLVTRFARETTSQLFREA
QGDGFIPNDRRKQDQKTNDYPRIAESNDVQKLPEDVQVPADPLEFDKLSLVWGKPRQPPL
GTEEWSTFLDCEGRVTDSEAVRKRIFYGGVEQGLRKEVWRFLLGYHSYDSTYAEREYLVS
VRKSEYETIKNQWKSISKEQARRFTKFRERKGLIEKDVVRTDRSISFYDEDDSPNIKCLR
DILLTYSFYNFDLGYCQGMSDLLSPILYVMEDESESFWCFVALMERLGPNFNRDQNGMHS
QLFALSKLVELLDSPLHNYFKQKDCLNYFFCFRWVLIQFKREFEFEKTMRLWEVLWTHYR
SEHLHLYVCVAILKRYRSKIIREEMDFDTLLKFINELSGHIDLDAILRDAEALCICAGEN
GESCIPPGTPPSLPLDDASMYYQQDDDDVL

Transcript Sequence

Gene sequence data has not been registered.